rs30800592 SNP Detail

Summary

• ID
  rs30800592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136408387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTCTGTT GGAATTATAC
  CTGTACGTGG GCTATAAGGA AGATAGGAAT TCATGAAGTG ATAAGGTATT TATTTTATTG
  CTGTGACTAA TTAAGATAAT AGTTTTCACT GTTCCATTTG TTAAAATCTT AAGATGTTGA
  ATTTCAAATA ATCTGCTGAT ATTTAAATTT TATCTTGTCA AGAATATCTG ATTTTTTCTA
  Y
  AAGATTATGA GTAAAAAAAA GTCTGCTTTC ACTACACCAA ATTTTTCATT AGTTATTCCA
  AGCAGGTTTG TTTGTTTGTT TTTGTTTTTG TTTTTGTTTT TGTTTTTTGG GGGGTTTTTT
  TGGTTTTTTT TTTTTTTTGG CAGCACGTAA GTTTATTCTC AAATCAAACA AATTATTATT
  TTTAAGTGGA ATTTATATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985521	NES10890701	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30800592					SNP	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985521	NES10890701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136408387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42822	predicted gene 42822			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			1414 bp upstream
Rr398058	regulatory region 398058			1601 bp downstream
Rr585849	regulatory region 585849			1710 bp distal
Rr585850	regulatory region 585850			355 bp proximal
Rr585851	regulatory region 585851			1949 bp proximal
Tssr31882	transcription start site region 31882			137 bp upstream