rs30800140 SNP Detail

Summary

• ID
  rs30800140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116646326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA GGGCCAAACT GAAGCCCAGA
  Y
  AAGGCTGGGT CAAAGGAGGG CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45965691	mCV25176315	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss133577967	ENSMUSSNP6460911	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321918466	CHEV_6_116619383	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs30800140					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116646326 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	259 bp distal
Rr637229	regulatory region 637229	182 bp distal
Rr637230	regulatory region 637230	619 bp proximal
Rr637231	regulatory region 637231	895 bp proximal
Rr637232	regulatory region 637232	1874 bp proximal
Tssr58383	transcription start site region 58383	20 bp upstream
Tssr58384	transcription start site region 58384	58 bp upstream
Tssr62604	transcription start site region 62604	974 bp upstream
Tssr62605	transcription start site region 62605	950 bp upstream