rs30799960 SNP Detail

Summary

• ID
  rs30799960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8493713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTACGA CAGTCTAGGC
  ACTGTGCTAA GGGCTGTAGA AGTCTTGCTT TACTTTTGAG TTTTTAAAAA ACTTTGACCA
  GCTAGTTATG ATTATTTCAA TTCTTGCACA AGGTACTGTG TATTGTGATG TTTTCTGTGT
  GCATTCTGAA TAGAGGGATT TAGGCAAAAG TTAAAGGAAG TCTGGCAGTT ACATATGATC
  W
  TTTTAGCATA ATAAGTACAT AGGAGCCAAT TTCATTTGCA ATGTGGGCAA AGTTCAAGTT
  TGCTGCCAAC TGTGGGCTCC ATGCCATTTA ATAAACTTTC CTTATAATTG TATTCATAAT
  ACATTATTAT CCTATTTATA CATTTCAAGA CATTTTCAGG AAACACTATG TGTGTCTGTG
  CAGTGTGTAA AGCGTTCTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45965101	mCV24766082	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss132970228	ENSMUSSNP2379748	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30799960					SNP	T	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8493713 () rs orientation: forward

Symbol	Name	Function Class
Gm45062	predicted gene 45062	Intron
Rr626407	regulatory region 626407	1598 bp proximal