rs30799600 SNP Detail

Summary

• ID
  rs30799600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60325450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAACTGGT TAGTGGGTTA
  ACTACAGGAA TTTTATATCA TAGAAGTAGT GTAAATGGGA AAATGGGGCG AAGGACACCA
  ACAATGACTT TAGGAGATAC ATATGCCTGG AGTACCATGA GATCTTCCCA GAATACTTCA
  TTAAATACCT GTTGATTTCT AAGTGATATA AATATATATT TATTCAATAA AATATTTCTT
  Y
  GTTTTGTCCT GATAGGATTG GCAAGACACG ATAATCAGAC ATTATTCATG TTGACTGTTG
  TATTGCAAAT CATTAAAATC TATTTCCTTC CTTCTCAAAA CAGAATCCAC CACAATATTT
  TTAAGTCAGT TTCTCACTCC TGACAGAAGA CAAGGGACAA TAAAAATTGC TGAAGAAATA
  CCTTATTGTG TTTCTATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45466939	mCV22663042	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135219119	ENSMUSSNP6302343	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs30799600					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60325450 () rs orientation: forward

Symbol	Name	Function Class
Gm54175	predicted gene, 54175	within coordinates
Rr577391	regulatory region 577391	697 bp proximal
Rr577392	regulatory region 577392	1256 bp proximal