rs30798841 SNP Detail

Summary

• ID
  rs30798841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGACCAA CTTCCTACAA
  ATTCCATAGT GTCAAAGGTT CTGGAAATAG CTACAGTAGC TGAGTTCAAG CATGTGAGCG
  GGTAGGGGAC ATTTGAGACT CCATAATAAC TGAGGGGCTG CTCCTTCCTT AAATAAACTG
  GTTCTGAGGA ATATGCTCAG TGCCACAGCT TTGCTTTAAA TCTCCTTGAT TATTTACCTT
  Y
  ATTACAAAAA TAACTTGTCA ATAAAATAAA CATGATACAC CAAAGTCAAC CAGAACTGAA
  GTCAATGTAT CTCAATGAAT GTCTATGTGG TTAGAACAGC CATTCTGAAG CTGGGGCACT
  TCACCCTGGA TTTTACATTT TCTCCGTGGG ATACGCTTTT ATGTATTCTA TCCACTACCA
  AAAATGAGAA GCCCACGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45466637	mCV24236773	ABI	CRAMUS_MOUSE	f	SNP	C	C	T		C		C
ss47026570	NES10845623	PERLEGEN	MM_PANEL2	f	SNP	C		T	C		T	C	C		C	C
ss136043388	ENSMUSSNP2465423	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				C
ss321010009	CHEV_3_146006405	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30798841					SNP	C	C	T	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026570	NES10845623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1844 bp proximal
Rr587007	regulatory region 587007	949 bp distal
Rr587008	regulatory region 587008	263 bp proximal
Rr587009	regulatory region 587009	372 bp proximal
Rr587010	regulatory region 587010	1650 bp proximal
Rr587011	regulatory region 587011	1956 bp proximal