rs30798817 SNP Detail

Summary

• ID
  rs30798817
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68189306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGCACAC ACATTGGTTA ACTCATACTT TGGCTATTGT
  GAATTGTGTT AGAATAAACA TTGAAGCATA GGTATTTCTT TGTTGTACTG ATTTTTTTTT
  K
  AACTGTAGAC CAAGTGGTAG GGTGGCTGGT TCCTATAATT GTCTATTTTA TCTACTGCTT
  CCTTCAATGG CTGAAACAGC TTCTGTCCAT ACCCTCAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466435	mCV24617333	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss135262161	ENSMUSSNP297147	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320791287	CHEV_3_68085895	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30798817					SNP	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68189306 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	1203 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	290 bp upstream