rs30798728 SNP Detail

Summary

• ID
  rs30798728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104547006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG CGGGCTACTG CTAGTAGTTA
  Y
  ACAGTGACAA ACTACTTTTG TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45466835	mCV24812779	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135570104	ENSMUSSNP1173949	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30798728					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104547006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	98 bp distal
Gm65697	predicted gene, 65697	1208 bp upstream
Rr367518	regulatory region 367518	1217 bp downstream
Rr582556	regulatory region 582556	1219 bp distal
Rr582557	regulatory region 582557	1012 bp distal
Rr582558	regulatory region 582558	1102 bp distal
Rr582559	regulatory region 582559	within coordinates
Rr582560	regulatory region 582560	455 bp distal
Rr582561	regulatory region 582561	1216 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron
Tssr31045	transcription start site region 31045	1015 bp downstream
Tssr34884	transcription start site region 34884	1248 bp upstream
Tssr34885	transcription start site region 34885	1148 bp upstream