rs30797660 SNP Detail

Summary

• ID
  rs30797660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56882095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGAAAC ACACGAATGC
  TCTTGACGGG CACTCTAGTG CAATGAGGTT AGCTTGAGAG AACTCAATCC ACCTTCCCTC
  TTTACAGCAA AGCAATGTGG GGTCTGGAGA AAGTAAGCCA CTTCCCATTA TGTCATTTAT
  GGACCAAAGC AGCAAGGTTG TTTTTAAAAT CATTTTGTGC CACTATAGGC ACTCAATCAT
  R
  TACCCACACT TGTACTACTG CAGGCAATCA TGTACACACA TCTGTGCCAC TGCAGGCAAT
  CATGTACACA CACCTGTGCC ACTGCAGGCA ATCATGTACA CACACCTGTG CCACTGCAGG
  CAATCAATCA TGAACACACA CCTGTGTCGC TATAGGCAAT TACATATATA TATGCTTACA
  TTAGAGTGCT TGAAAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45964584	mCV23495514	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss60887158	NES15965985	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30797660					SNP	A	A	G	G	G	G	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887158	NES15965985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56882095 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			801 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr631118	regulatory region 631118			1938 bp distal
Rr631119	regulatory region 631119			1620 bp distal
Rr631120	regulatory region 631120			494 bp distal
Rr631121	regulatory region 631121			within coordinates
Rr631122	regulatory region 631122			1081 bp proximal