rs30797637 SNP Detail

Summary

• ID
  rs30797637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63806180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC TTCACAGCCC GGGCGTCGCT
  Y
  CGGTAACCCA TGATTTGTCG CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45465048	mCV24527901	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		T
ss60416436	NES15918975	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	C	T	C	C	C	C	C
ss135243713	ENSMUSSNP7014703	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30797637					SNP	T	T	C	T	T	T	T	T	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416436	NES15918975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63806180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	within coordinates
Plch1	phospholipase C, eta 1	Intron
Rr577601	regulatory region 577601	1272 bp distal
Rr577602	regulatory region 577602	within coordinates
Rr577603	regulatory region 577603	604 bp proximal
Tssr33440	transcription start site region 33440	637 bp downstream
Tssr33441	transcription start site region 33441	651 bp downstream
Tssr33442	transcription start site region 33442	678 bp downstream