rs30797485 SNP Detail

Summary

• ID
  rs30797485
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30074105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATGTAAGCG TGAGGTGCTC TGACTCCGTG GGAACAGGTC AAAATAAGTA AGTTGCAATG
  TGTCTGTATA CCAGACTCAA GTAAACACCC ACGTATGCAC AACACGGAAG CTAGTCCCGC
  CTGCAAGTGT GACTGTACTT TTTTAATCCT TTGTTCTGCT CCAACGTCAG TTGCCCTAAT
  TCTTATCTTG ACTTTGGGAG AGGAGAATTT TAACAATTCG TTTGGGTTTT TTTTGTTTCT
  CTCTCTCCTC GCTCTCTTGC TCTCTCTCTC TTTCTCTCTC TTTCACTCTC TCTCTCTCTC
  W
  CTCTCTCTCT CTCTCTCTCT CTCTCGCTCT CTCGCTCTCT CGCTCTCGCT CTGCTTCCCT
  GGAAGATGTC TGTCCATGTC TGGCATGCAC CTGAGCTTCT CCATTCCCAT TTACTGTGTC
  CTCTGCTAAT CAGGCTAATC AGCAAGAGAG CCTTATAAAC AAAGGTGAAC AGGGACCCAA
  AGAGGTAAGC TCGAACAGGA GCGCGCATGC GTGCTCGCCC ACACATCACA CCCGCCCCTC
  AGGTCAGAAA AGGCATGCCT TACTTACAAT GTCCTCTGGT AAACTTCACA TGCCAGAAAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45466218	mCV22689649	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30797485					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30074105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			within coordinates
Rr574707	regulatory region 574707			1324 bp distal
Rr574708	regulatory region 574708			118 bp distal
Rr574709	regulatory region 574709			94 bp proximal