rs30797443 SNP Detail

Summary

• ID
  rs30797443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145099076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTATGACA TGATACTTAT TTTGACATAT AAAAATAACA
  GCCATCAATA AACTAAGATA TAATGTAGAA ATAAGGAAGC AAGAAAGACA TATAAAGAGT
  R
  GTGTTATAGT GTCTCTGGTC TAGCCTACTC TAGCCTTTGC CTGCTTAGGA ACATAAACAC
  CTTTGTCTCT TTCTTCATTC ACGCAATAGT TCATTCATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466515	mCV23544695	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss136038050	ENSMUSSNP3711449	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321008146	CHEV_3_145056285	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30797443					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145099076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			1345 bp upstream
Rr586774	regulatory region 586774			890 bp distal
Rr586775	regulatory region 586775			686 bp distal
Rr586776	regulatory region 586776			883 bp proximal