rs30797403 SNP Detail

Summary

• ID
  rs30797403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112185564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGACTTGGG AGCACAGACA TCTCATTAAA GGAGTCATTT
  CAGATTCCAT GGGTAAACTT CGGATCGTCA TTGATTACTC TTACTTGCAT CGCTCTATTG
  R
  AGGAGTTGTA CCTGTAGTTT TCATCAGTGG GTTTTATCTT TCAATGTCAT TTCCCACTGG
  ATAGCATGAC TCTGTGGTGT AGTTATCTCT TCTAAATTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45964179	mCV24108630	ABI	CRAMUS_MOUSE	f	SNP		G	A			G		A
ss51832923	NES14763421	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G		G	A	G	A		A	G	A	A		A
ss133558883	ENSMUSSNP6825212	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss321908052	CHEV_6_112158597	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30797403					SNP	G	G	A	G	G	G	G	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51832923	NES14763421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112185564 () rs orientation: forward

Symbol	Name	Function Class
Gm66265	predicted gene, 66265	1751 bp upstream
Rr636305	regulatory region 636305	1006 bp distal
Rr636306	regulatory region 636306	1154 bp distal
Rr636307	regulatory region 636307	305 bp proximal
Rr636308	regulatory region 636308	357 bp proximal
Rr636309	regulatory region 636309	1590 bp proximal