rs30797315 SNP Detail

Summary

• ID
  rs30797315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72622775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCTCCTCT AATCCCCATT TAATAGATGA GGAAACTGAG
  GCAGAGAGAT GACGTAATTT GCCCAAAGCT TTGAGAAGAG AGGGAAGCAA AGCCGGGATC
  R
  GAACCTGCAG GTTTCCACGG CAACCATGAC CAGCACATCT CAAGGCAGCG CCCTCCTCTC
  TGTTCTTGGG AGTTTGGATA AGCTGCTGTA CTCTAGGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45964474	mCV25026821	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss133286326	ENSMUSSNP5490589	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
ss321822493	CHEV_6_72595786	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30797315					SNP	A	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72622775 () rs orientation: forward

Symbol	Name	Function Class
Gm38114	predicted gene, 38114	1707 bp upstream
Rr632258	regulatory region 632258	within coordinates
Rr632259	regulatory region 632259	1435 bp proximal
Rr632260	regulatory region 632260	1695 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron