rs30796628 SNP Detail

Summary

• ID
  rs30796628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27210392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTCCAT CTTATGCTTT
  CTTTTTTTCT GGCCAAATGT GAGGATTAGA CATGCAAGTG ATATGTATAC ATACATCCAG
  CAAAACACTC ATACACAAAA AATAAAATTT TCAAATCTAA ACATGTTTTT AATGTGTAGA
  CCTTTTTAGA AAAGCATGGT CTATTTGCTC TTTGATAAGC AGAGGGTGTG CAGAGGTAGG
  R
  ACCCAGTTAA AGCTGTTCTC AGTAATTTAC TCACAGTTAT TGTGCAATAA GCGCTAAGCG
  TCCAGTAAGG TACGCTAGGA ATGAGACGGA ACAGACAAGA ACCTTGACCT CATCCTGGAA
  CTAGCTTTTA TCCCACAAGC TTTCACAAAG AGAACAGTAA TAAAAAAATA ACTGTCTGAT
  TCTGAAGCTT TTTCAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45464936	mCV24689752	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss60380481	NES15884373	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G		A	A	A	A	A	G	A
ss134702361	ENSMUSSNP4428557	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30796628					SNP	A	A	G	G	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380481	NES15884373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27210392 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Rr374716	regulatory region 374716	within coordinates
Rr574354	regulatory region 574354	495 bp proximal