rs30796533 SNP Detail

Summary

• ID
  rs30796533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82053417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGACTCT AAGAAAAGTT GAAAAGTTGG CACATTAAAA
  CTAAAAACAT TTTCTCTAGT ACAAGCTGGT GCAGAACCAC TGTAGTTTCC TGAATCTGAA
  R
  CCTGGTGGGG AACTTTCTTT CTCCTTGGGT GGCTTTGGTG GCCTGGCTTT TAGGTTTGAG
  GCTACTCTAC TCATTTCAAA GGTAATTTTG TGGTCACAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45466216	mCV24169910	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss46713161	NES10751704	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G		A	G	A		A		A
ss320817905	CHEV_3_81950032	CHEVERUD	SCREENING_POP	f	SNP											G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30796533					SNP	A	G	G	G	A	G	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713161	NES10751704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82053417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13288	CpG island 13288	375 bp distal
Gm29921	predicted gene, 29921	288 bp downstream
Gm65571	predicted gene, 65571	105 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1	321 bp upstream
Rr578750	regulatory region 578750	1048 bp distal
Rr578751	regulatory region 578751	547 bp distal
Rr578752	regulatory region 578752	within coordinates
Tssr33784	transcription start site region 33784	356 bp upstream
Tssr33785	transcription start site region 33785	267 bp upstream
Tssr33786	transcription start site region 33786	227 bp upstream