rs30796322 SNP Detail

Summary

• ID
  rs30796322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90567321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA GTGCCCCAAG TCAGGTCTAG
  Y
  CACCTATCCC CAGTAAGTCA ATTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45466504	mCV24984323	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		T
ss60424106	NES15930453	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C		C	T	C	C		C	C	C	C		C
ss135478344	ENSMUSSNP6721187	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320838516	CHEV_3_90463936	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30796322					SNP	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424106	NES15930453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90567321 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	1345 bp downstream
S100a7a	S100 calcium binding protein A7A	1884 bp downstream
Tssr946	transcription start site region 946	24 bp downstream
Tssr30264	transcription start site region 30264	354 bp downstream
Tssr34247	transcription start site region 34247	578 bp upstream
Tssr34248	transcription start site region 34248	566 bp upstream