rs30795361 SNP Detail

Summary

• ID
  rs30795361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136391256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGTTTGAA ACATAGTAAT CTACCTTTAA TTACAAATCA
  TTCAATCAAT CAATCTGGCT CTGGGACTTG GATTCTGTCA CTGAGTTGAA GCCACAGCCT
  R
  TTTTGTCCCA CTGGGCTGCT CAGGCTGGCT TTGAGCATGC CGTCCCCATA CTTCACCTAC
  CATCACAACC CTGAACTACC AGAGCTGAGG TTGAAATAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46985351	NES10891119	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	G	A	A		A	G		A
ss135937043	ENSMUSSNP2653642	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss320974513	CHEV_3_136348459	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30795361					SNP	A	A	A	G	A	A	A	G	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985351	NES10891119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136391256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			591 bp distal
Rr585843	regulatory region 585843			1107 bp proximal
Tssr31878	transcription start site region 31878			594 bp downstream
Tssr35850	transcription start site region 35850			828 bp upstream