rs30795359 SNP Detail

Summary

• ID
  rs30795359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136390110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAATCCC GTGCAGAGAC GCCAAGCCTG GGGCCTGCTC
  AGAAAGAGCG TTTGGAGCGT GGCAGACCCT GTTGCTTTAG TAGACGACAG CTCCTTGGAG
  R
  GCCAGGCTTT CTACTCCTAG AAGGGCTTTC TTTGCATTAG GTGTGTGTTT CCTCTTATCC
  TGTCCACCAC TCTCCTGGTG GCTTGGGGGC CTCTGCCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46985349	NES10891151	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A			A		A
ss135937001	ENSMUSSNP6846563	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			G			A
ss320974507	CHEV_3_136347313	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30795359					SNP	A	A	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985349	NES10891151	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136390110 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			141 bp proximal
Tssr31878	transcription start site region 31878			537 bp upstream
Tssr35850	transcription start site region 35850			303 bp downstream