rs30794931 SNP Detail

Summary

• ID
  rs30794931
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACTGCAG AACAGAAAAG CAAAGGGTTC AGAGGATAAC
  TGCTGTGATC TAGAAGCCAC CTTGATAAAC CTTCAACCGT AGTCGAGCTC ACCCACACAG
  W
  AGGTGAAGCT GGAAAGAAAC GCCTTGTCAA CTGTCTCCAG CTAAACGTAC ATTTTCCTTT
  TTACAGTTTT ACCATGTATG TGTACAGGTG TTGTGGCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45465906	mCV25348759	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss135887707	ENSMUSSNP2601644	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30794931					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474950 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1054 bp distal
Rr585060	regulatory region 585060			520 bp distal
Rr585061	regulatory region 585061			143 bp proximal
Rr585062	regulatory region 585062			535 bp proximal
Rr585063	regulatory region 585063			1146 bp proximal
Tssr35620	transcription start site region 35620			1984 bp downstream