rs30794715 SNP Detail

Summary

• ID
  rs30794715
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152656287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTACTTT GTGACTGCTG
  TGATAAGACC ACAGCCAAAA GCAGCTTGAG GAAGAAAGGG CTTATTAAAA CTTCAGATCA
  TCACTTAGAG AAGCCAAGGT AGGACATCAG TGCAGGAACC CGGAAGCAGA CCTTAAACTG
  GAGCCTGTAT AAAGGTGCTG CTCACTGGCT GGCTCGCTCA GTTTGATTTC TAATACCATC
  M
  AGGACCAAGT GGAGCACCAT GCACCATGGA CTGGACCCTC TCACATTCAC TAATGAAGAA
  AATGCATTCC CGTAACTGAG AGCCTTTCCC AAATGACTCT GCCTTGTGTG TCAAGTTGAC
  AAAGCCTAAC GAACATACAG GGTAGCCAGG GAGAGATACC AGATGATTTT GGAGGCTGAC
  ATAGTAATTA TCTTTATTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466686	mCV24026812	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss136105119	ENSMUSSNP5297985	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss321029347	CHEV_3_152613614	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30794715					SNP	A	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152656287 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	60 bp distal
Rr587635	regulatory region 587635	455 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron