rs30789265 SNP Detail

Summary

• ID
  rs30789265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60528512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCCTAC AGTGAGCACA
  GAGACAAAGC CCAGGAGCTA AAATGACCTT CTGTTCACTC TGTCTCATGC ATTGAAGTTT
  TTAGCATTTT AATAGGAAAT ATGATTTCTA TTTATTCAGG GTGTTTAGTC TAAAGGAAAC
  ATTAATGCAT TCATGTGTCG GATTGGGGAG TAGCAGACCA GTAAGAGAGC TAGCAGCTGG
  R
  TTAAAACAAG GGCATTACAG AATTTCTTCT AGAGAATTGA ATAGGTGTAA ATTTTCTTGG
  AAGTCCTCTG CTTATAGGCA GCAGCTGAGA GAAACAGAGT ATAGCAGCAC ACAGTGAACT
  GGCTTTCACT CCCCCTCGGG ACTAGTTCTA ACGACCACTG TGCTATCATC TACTGTGTGA
  TTTGACCGTG CTGACATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984778	NES10791666	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30789265					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984778	NES10791666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60528512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577445	regulatory region 577445			370 bp distal
Tssr29321	transcription start site region 29321			1060 bp upstream