rs30788392 SNP Detail

Summary

• ID
  rs30788392
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60527306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGATAAC CCCAACTAAA
  ATTCAGTCAG GACAAGCTAA GGTTATGGAG AAAGGTCAGC TCACTTCCAG CACGCGCAGG
  CTCAGTTGTG CATAAGAGAA TGGAATACAG TACGAAAACA GTAGCATCGT ACTCAATTCA
  AAACCTTTAA CTTTAATAAT ATTTGAAGGG CTTCAGTGTT CCTTAGGCAA CACACTCTGC
  S
  CCTTCATTTT CCTTTGCCGT TTTCTTTCCC AGTCCTCCTG CCCTGGAGGG CAGCGCTTAC
  ACAGAATCTA GACCCAGCAT TAAGTTGCGC TTACTGTGTT GTCTCAAATT ATAGTCTTTG
  TTAGTGGTCT GTTTTGTTGT TCTTGTTGCC CTTTCACAAG TCTTTATACA ATAGTACTAG
  CAAATTACAA ATCTACTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984775	NES10791664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30788392					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984775	NES10791664	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60527306 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			1535 bp downstream
Rr577445	regulatory region 577445			193 bp proximal
Tssr29320	transcription start site region 29320			1681 bp downstream