rs30788389 SNP Detail

Summary

• ID
  rs30788389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60526773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCTTAC TATCAACTTA
  AATAAGCAAA AATTATCACA AAGACATTCC AATTAGATTC CTGACTATAA CATTTTCTCT
  CTTCTATTTA TGTTTTTCTC CTTAGCTATA CCTTTAATTT ACTTATTTTA TATAAGTATT
  TTTATATTCA CACAGATAAT CAAAATTTTA ATTTAAAAGA TAATGTAATC ACAGTGACAC
  R
  TTTCTCAGAA CCACACCATT CTGCTGTGTA AACATCTTTC TAGGGGAAAT TGGGAGTTGA
  TCAACATATT AGCTTAAATT TTGTCTTGTG TGAAAAACCG AGGGAAACTT TAAATTGACT
  ATTTGGGCAT CATTAGTAAA TTAACCCATT GGAAGTAAAG ATGAATATTA TGGTCATTTC
  AAAAATGGCT TTTGGTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984772	NES10791662	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30788389					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984772	NES10791662	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60526773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			1002 bp downstream
Rr577445	regulatory region 577445			726 bp proximal
Tssr29318	transcription start site region 29318			1949 bp downstream
Tssr29319	transcription start site region 29319			1880 bp downstream
Tssr29320	transcription start site region 29320			1148 bp downstream