rs30788387 SNP Detail

Summary

• ID
  rs30788387
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60526075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGAGA ATTTTGAGGC
  TATCCTCTAG TATCTTTCCC CCTCTGTCTC TTACCCTGTG TAGCCCAGGT TTGAAGATGT
  TCTCCTATTT TCATTCAGTC CCCATGATTC ACCTTAGCCA TTACATGTTT GCAAGACCTT
  GAATACAAGC ATCCTGGACC AAGCTCATAA GCTCATATGT AGTCTGTGCC TTAAGAATCT
  K
  CCAATGGCAA GGCGATGGGA AGGAATGGCC CTCGGCCCCA ACAACTCATG GCTCCACAGA
  CTTCCATGTT CTCCATCTTC AGTTTTCCAT AATGATTTTA ACTTCCTTGG AAGCATATCA
  CTTCTCTCTA CCTATCATAT TTCTCTCAGC CAGTGCCATC AGACAGTTTT TTAAAGAGCT
  AAACTAGTTT AAGACAACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984770	NES10791720	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30788387					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984770	NES10791720	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60526075 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			304 bp downstream
Rr577445	regulatory region 577445			1424 bp proximal
Tssr29316	transcription start site region 29316			1538 bp downstream
Tssr29317	transcription start site region 29317			1317 bp downstream
Tssr29318	transcription start site region 29318			1251 bp downstream
Tssr29319	transcription start site region 29319			1182 bp downstream
Tssr29320	transcription start site region 29320			450 bp downstream