rs30787500 SNP Detail

Summary

• ID
  rs30787500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60524744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACTAAA GGAAGTCAGC
  CTTACCATAG ATTCAAATAT AATCACATGT GTAGTGTCTT GGACAGAATA AGCTCATTTC
  CCAAAATCTA GCTTATTTTA TATGCATATA CTATAGAATT AATACAGGTG AAATATTCTA
  TTAATTACAG TATAATTTAG AAAATACACT GTATTTTTCA CAGCTTGGAT TTTTAGGGCT
  M
  TGAGGTGTGT TGCTTCAACA GTAACTGTAG ATGTGTGGGT CTGTTTCATT GAAATTACAG
  GGAAGCACAG TGTGCTAGCT CCATAGAACA GGTGACTACA TATATAGGAA CTAGATTCTT
  GACAATGAGT CAAGGATTCT AGCTAACCAT CTACCTAAAA GAAAAGAACA AAACCCAAAC
  AAACAAACAA ACAAACAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984762	NES10791782	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30787500					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984762	NES10791782	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60524744 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			within coordinates
Rr577443	regulatory region 577443			1855 bp distal
Rr577444	regulatory region 577444			905 bp distal
Tssr29316	transcription start site region 29316			207 bp downstream
Tssr29317	transcription start site region 29317			within coordinates
Tssr29318	transcription start site region 29318			57 bp upstream
Tssr29319	transcription start site region 29319			116 bp upstream
Tssr29320	transcription start site region 29320			872 bp upstream