rs30787498 SNP Detail

Summary

• ID
  rs30787498
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60523310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCTGGAA TGCATCTGCT ATGATCTCCT CGGGGTGCTA
  CTGTTAAAGC AGGAAACACC TGCAGCGCAG GTCAGCTGTT AGCCATGGGA GGGCGAATGG
  K
  AAGCGAGTCA GCTGGGAAGA CACATTCGGT TTTCTTATGG CTTTCCTTTA AAAGAGAAAA
  CTTAAGCTTT CTGACACAGA CATGCTTTAT ATATTTCTGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss46984760	NES10791780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30787498					SNP	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984760	NES10791780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60523310 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			1198 bp upstream
Rr577443	regulatory region 577443			421 bp distal
Rr577444	regulatory region 577444			367 bp proximal
Tssr29315	transcription start site region 29315			1455 bp downstream
Tssr29316	transcription start site region 29316			1205 bp upstream
Tssr29317	transcription start site region 29317			1425 bp upstream
Tssr29318	transcription start site region 29318			1491 bp upstream
Tssr29319	transcription start site region 29319			1550 bp upstream