rs30787496 SNP Detail

Summary

• ID
  rs30787496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60523238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAATTC CTCAAGCTGT
  ACTTCCCCCA TTGCCAAAGA GGCCTGCTCT TGAAAAAACC AACGGTGCCA CCGCAGTCTT
  TAACACTGGT ATTTTCCAAT ACCAACAGGC TCTAGCCAAC ATGCAGTTAC AGCAGCATAC
  AGCATTTCTC CCACCAGGTA AGGGCTTGGG TTTGCTCTGG AATGCATCTG CTATGATCTC
  Y
  TCGGGGTGCT ACTGTTAAAG CAGGAAACAC CTGCAGCGCA GGTCAGCTGT TAGCCATGGG
  AGGGCGAATG GTAAGCGAGT CAGCTGGGAA GACACATTCG GTTTTCTTAT GGCTTTCCTT
  TAAAAGAGAA AACTTAAGCT TTCTGACACA GACATGCTTT ATATATTTCT GGTGTTTATG
  CTATTTGGAA TTGAAATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984758	NES10791778	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30787496					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984758	NES10791778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60523238 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			1270 bp upstream
Rr577443	regulatory region 577443			349 bp distal
Rr577444	regulatory region 577444			439 bp proximal
Tssr29315	transcription start site region 29315			1383 bp downstream
Tssr29316	transcription start site region 29316			1277 bp upstream
Tssr29317	transcription start site region 29317			1497 bp upstream
Tssr29318	transcription start site region 29318			1563 bp upstream
Tssr29319	transcription start site region 29319			1622 bp upstream