rs30787494 SNP Detail

Summary

• ID
  rs30787494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60522721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTGGT TAGCATGGCT
  TTAGTGATAG GCTTCTTTTC TTTTTAACAT AGAGTGCAGT ATTTCAGAAG AGTTTGCATG
  CTCTGGGACA TTTGCATGTG TCAGCAGGCT GGGGAGGGCA GAGCTGGCAG GACCCAGCCA
  GTCACTGTAC AGTTAACTAT TAACAGTGCT TCTACTTGGC AGTCCTCACG GGGCTCCCGC
  R
  GCAGCTTTCC TTCTTCCCCA AATAGATGGC TTCTCACAGA AAGCCCGAAG CATTATGGGA
  CATAAAAGAC CTTCCGCGTT ATAACATGTG CTCTCGTTAC TCGTGGGCTT TTGTTGTGGA
  CAAAATAATG CTTCCTCTAA AGCTTTTATC TTGCTTAATT TCTTTAATTG GTTTTGTCAC
  CTGGATTGTC CCCCTGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984756	NES10791776	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30787494					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984756	NES10791776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60522721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			1787 bp upstream
Rr577443	regulatory region 577443			within coordinates
Rr577444	regulatory region 577444			956 bp proximal
Tssr29315	transcription start site region 29315			866 bp downstream
Tssr29316	transcription start site region 29316			1794 bp upstream