rs30786448 SNP Detail

Summary

• ID
  rs30786448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60521104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGCAGC ACAGGCTGCA
  GCTACTGCAG CTGCCATGGT GAGTGGAGAC AGCAGTGCCC TCCTGTCAGC AATCAGAAAA
  GATAGTGAAC AATTTCTCTA CTGCCAGCTA TTCATCTATT AACCTCTTCC TCCCGTTTTG
  CTGAAGATAT GTTTGTTCAG GTATCCCACA CAATACATAA AGAAGCTACC ATTCACAGAC
  R
  CAAGGATAAC TCCTCAAATG TTGCTCATCC TCTTAGCCTA ACCCCTAAGA CTGTCTCATT
  CTGGATGTAG GGTTTCTGAA ATTCCTGCTT CATAAGGAAC CACTTGTCGC CTTTCTGATT
  GAACGACACT GCCATTTCCA GTCTCTGATT TCTGTATGCC ATCCAGCTGG CCCTTGTTCT
  CCTTGAGTGT GTTCTTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984750	NES10791824	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30786448					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984750	NES10791824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60521104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr397694	regulatory region 397694			1351 bp downstream
Rr577441	regulatory region 577441			1500 bp distal
Rr577442	regulatory region 577442			1607 bp distal
Rr577443	regulatory region 577443			1295 bp proximal
Tssr29315	transcription start site region 29315			738 bp upstream