rs30786444 SNP Detail

Summary

• ID
  rs30786444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60520434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAGTCC TCAGTTTTAA
  CAATAGGAAA TGATACAAAT ACCGTGATGT GGTGTGTTGG TTTTGAATCA CACCAACAGA
  GTGGTGTGTC CCTGTGTCTC AATCTTTATG CATTTACTTG GTGAGAATGA TGGCTGCTGG
  CTCTCCTCAC TATAAAATCC AGACTTTCCC CCTCTCTAAT TAATAAGGAA ACCAACACAA
  Y
  AGTGGATAGA TGTTTCATTA TATGCTCTCT GTTCACTGTA AACATATTTT CTTTCTCAAG
  AACATTCCCC TGGAAATGTG CTAATATTTA AATGCTAAGC ACTGCTGAGT TATGCCACTA
  CATTGCTCTA GTTTGCCCTC TCCCTCCATG TACACCCTTG GTCACCAATT TGGATAGTTG
  GATTACTGTT TTCAGAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984746	NES10791822	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30786444					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984746	NES10791822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60520434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr397694	regulatory region 397694			681 bp downstream
Rr577441	regulatory region 577441			830 bp distal
Rr577442	regulatory region 577442			937 bp distal
Rr577443	regulatory region 577443			1965 bp proximal
Tssr29315	transcription start site region 29315			1408 bp upstream