rs30785659 SNP Detail

Summary

• ID
  rs30785659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60479025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTTCCT TTTGGCTGTT
  ATTTGTGGAT AGAAATTATG CCCCCTGAGA ACTGTGAAGT CTTCAGTGAG CTAATGTGTG
  TGCAGCATGA AAGCCATACT CAGCACGTTC TGTGATTGTA AATATATGTA GTAAGTATCT
  GTCCCAAATC AAGTTGTTGA TAAATTGGAA ACCTGTGTTG TAGCACACAT CTTTGTATTT
  R
  GAGATCAAAT GCATGACTCT AAATCCTTGG CATTTCCTCA TTTAGATTTA TCTAGCACTT
  GCACACCCTA AATGTTTCTG TGATCAGATC TGTCATATTA ATCAGCTGGT TATTGCATAA
  AATGTACAGC TGTCAAAGAT AGGCACAAAA GCAAATCACA AGAATATCTC ATCTGTGTTT
  TTTCTATCAA AATGATGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984323	NES10792839	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30785659					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984323	NES10792839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60479025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375057	regulatory region 375057			195 bp downstream
Rr577427	regulatory region 577427			1985 bp distal
Rr577428	regulatory region 577428			542 bp distal