rs30785657 SNP Detail

Summary

• ID
  rs30785657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60478954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCAGTTC AGCCCTGCCA
  TGTCCACATA GCCATAGAGC ATTGGCAATT TAGTTTGTTT TCAATTGAAG TCTGCCTTCC
  TTTTGGCTGT TATTTGTGGA TAGAAATTAT GCCCCCTGAG AACTGTGAAG TCTTCAGTGA
  GCTAATGTGT GTGCAGCATG AAAGCCATAC TCAGCACGTT CTGTGATTGT AAATATATGT
  R
  GTAAGTATCT GTCCCAAATC AAGTTGTTGA TAAATTGGAA ACCTGTGTTG TAGCACACAT
  CTTTGTATTT AGAGATCAAA TGCATGACTC TAAATCCTTG GCATTTCCTC ATTTAGATTT
  ATCTAGCACT TGCACACCCT AAATGTTTCT GTGATCAGAT CTGTCATATT AATCAGCTGG
  TTATTGCATA AAATGTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984321	NES10792838	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30785657					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984321	NES10792838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60478954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375057	regulatory region 375057			124 bp downstream
Rr577427	regulatory region 577427			1914 bp distal
Rr577428	regulatory region 577428			471 bp distal