rs30784504 SNP Detail

Summary

• ID
  rs30784504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126433845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAACCA ATATAGGTGC
  ATTAAATGTC TCTCCAAATT TAAGTAACTT TTGAAAAGAT TCTCCCAGTT TCCCTTAACA
  CCTAAATTTG ACATTACTTT GGTTGAAGCC ATTACTTTCT GGTTTGTCCT CAGTAGACAT
  GAGGGTAGCC GTTAGCATTC CCAGAACAAT AAGTAGTACA AAATTCTGGA ACATGAAAAG
  R
  CCCCCTCTCA GCTCTCCCCT CACATCCCGA ACACACCTAG CGCTTTCACC TACCTTTCTT
  TTCCAACCCT GTCATTCTCC ACGTGAGCTT CTGTTTTCAG TTCTCTGCAC TGCCCTCAGA
  TGTCAAGACT TAACCAGGCC TGGCTCTCTA GCACACACCT AGGAGCGAAG AATAAAATAA
  GCAGCTTAGC TCCGAGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45464585	mCV23465808	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135837676	ENSMUSSNP6785326	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320946895	CHEV_3_126343114	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30784504					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126433845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			1339 bp distal
Rr584664	regulatory region 584664			345 bp distal
Rr584665	regulatory region 584665			415 bp proximal
Rr584666	regulatory region 584666			1048 bp proximal