rs30784017 SNP Detail

Summary

• ID
  rs30784017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60477600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGCTGA CGTGAATTCC
  CTGAAATCAT AATGTGCTGC AGTCAGTAGA TCATCAGTCA GACCAGAAGA GCACCGCTGA
  TTACCCACTG AATTATGCAT ACAAATATTT GCAACATCCT GAGTAATTAA CTCATAAAAA
  TAAACAATTA CCATAATGGA GATTGAGTGA ATTTCCATAT ATTTTCCACT CCTAAAAATA
  Y
  TATCCAGCTG GTTAATACTA TTATATTTCT TAAAGAGAAA TATTTAGATA CAGTTTTTGC
  CACATGTATT TTCCATGGCT TTAGAAAAAT CTCAGAATTT CAAACGTAAG GATTTCCTGA
  GGAAGATTAG TTTCTATTAA ATTTTTCTGG TATATACAAA ACTTAGGTAT TTGACTCTGA
  TATCTGAGAA AAATACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46984299	NES10792827	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30784017					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984299	NES10792827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60477600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375057	regulatory region 375057			within coordinates
Rr577425	regulatory region 577425			1443 bp distal
Rr577426	regulatory region 577426			1008 bp distal
Rr577427	regulatory region 577427			560 bp distal
Rr577428	regulatory region 577428			255 bp proximal