rs30783121 SNP Detail

Summary

• ID
  rs30783121
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60489979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACTTGA GAAGAAGAGA
  GATCTGTTAC AAAAGCAGCA GCTCGGGACA TCTCAGTGTC CTGCCAGCAC TATGGTATCC
  CTATGAAAAA CAGCTGCTCC AGCTTGGTAC AGTAATGTAA GAAAAGCTTC TAGAAGATGC
  AAACATATTC CTCAGGGTCC ACACTTCTGT CAGGGACTTT TTTATGTCAT ATTTAAGAAG
  W
  GAGTGGCTAC AGTTTTCTTT TTTAATAGGG TATTACAAAT GATTTTGAAG TTTTGATTTG
  TGCAGGTGCA GGCCTGTCGG ACTATTCACC AAAGAGTAGT CCTGGTAATT TCTTATATTA
  ATAATTAGAG GGGGTTTTCC TGCTGTTTAT TGTGTCAGGA TGGCTTTGTG TGTTCCCTTG
  GCCTGCTTCA CTTGATCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984389	NES10792685	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30783121					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984389	NES10792685	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60489979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19816	predicted gene, 19816			1198 bp downstream
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577432	regulatory region 577432			60 bp distal
Rr577433	regulatory region 577433			187 bp proximal