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rs30783119 SNP Detail
Summary
  • ID
    rs30783119
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:60489894 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTCTTAAC CACTTTCTAT
    TTTAGTATGC CCTGGCAAAT TACGTAAGAG CCATAATTGG GTGAGCTCTA ATGTCTGGGC
    AAGGAACTCA CTTGAGAAGA AGAGAGATCT GTTACAAAAG CAGCAGCTCG GGACATCTCA
    GTGTCCTGCC AGCACTATGG TATCCCTATG AAAAACAGCT GCTCCAGCTT GGTACAGTAA
    Y
    GTAAGAAAAG CTTCTAGAAG ATGCAAACAT ATTCCTCAGG GTCCACACTT CTGTCAGGGA
    CTTTTTTATG TCATATTTAA GAAGAGAGTG GCTACAGTTT TCTTTTTTAA TAGGGTATTA
    CAAATGATTT TGAAGTTTTG ATTTGTGCAG GTGCAGGCCT GTCGGACTAT TCACCAAAGA
    GTAGTCCTGG TAATTTCTTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46984387 NES10792684 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30783119 SNP T T T T T T T T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46984387 NES10792684 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:60489894 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm19816 predicted gene, 19816 1113 bp downstream
Mbnl1 muscleblind like splicing regulator 1 Intron
Noncoding-Transcript-Variant
Rr577432 regulatory region 577432 within coordinates
Rr577433 regulatory region 577433 272 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory