rs30783117 SNP Detail

Summary

• ID
  rs30783117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60489471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTAGG CTAAGGACCT
  TAAGGTGAGC CTTAAACAAT GCTCTGCTTT AGGAGAGAAA GAGAGAAAAA GGGGGTCTGG
  AGAGAAAGAG TTGGGGGCTA TGTGACTTAT TTTATGAAAT AAAATTTCAC GCATCTTTCT
  AAGATAAAAA ATTTAGAATG CAATTGAAAA ATTAGAGTAA TATTAAAGGG ATAGAAAGTT
  Y
  AACCATATGA GCCCTTGTAC ATATTTACAC TTTATTTCAA GTGCTGTTTG AAAACTCTAA
  AGAGGGGTGG GGATGAATGG AAATCTTCTG AAATTCAGCA TACTTCTCCT ACCTCTGCCC
  ATGAATAAAC AACTGTCCTA GAATTTGTAT CTTTGCAACC ACAAAAGGGC AGAACACCTA
  ATGTTAGTCA TTAGTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984385	NES10792683	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30783117					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984385	NES10792683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60489471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19816	predicted gene, 19816			690 bp downstream
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577432	regulatory region 577432			191 bp proximal
Rr577433	regulatory region 577433			695 bp proximal