rs30782995 SNP Detail

Summary

• ID
  rs30782995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60475864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTAAG TGGTCTGTTG
  GAGAATGAAT AAAGACATTT TTATTCATTG TTAAATTCTG GAAATGAATC AGTTTGACGA
  TGGGGGCTTT TCTACATTAT AACAGATACA GAGTGCAGTT TAAATACATA GGCACACCAG
  AGAAGCAAAT AGTGCATCCA ATTAGGAAGC TGAGCCTTGA ATGTCACAGA CATCTTTTGT
  Y
  ATTGTTTATT CACTAAGAAA ATGAGAGGCA TCAGACTAAT TGCTTCCTGC TGTCAGTTAT
  TTTGAATGGT GAATAAAGAC AGCCACTTCT TTACATTGCC TTCATTTGCT CAGCTCATTA
  CTGATGCTGT AATAGACCAC TGTTGGGAAG GAATAGTTTG CCAAATATTA GATTATTTTA
  TGTGGTAAAG AGAATAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984277	NES10792816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30782995					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984277	NES10792816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60475864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375057	regulatory region 375057			1117 bp upstream
Rr577425	regulatory region 577425			within coordinates
Rr577426	regulatory region 577426			447 bp proximal
Rr577427	regulatory region 577427			846 bp proximal
Rr577428	regulatory region 577428			1991 bp proximal
Tssr29309	transcription start site region 29309			878 bp downstream