rs30781954 SNP Detail

Summary

• ID
  rs30781954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60414500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAAGCT TGACTTAATG
  CTAGAATTTT CAGACTATTT ACAACTGTGC ATTTTCACCT TCTATCCAAC AGTCATGCCT
  TAGTATTGTT GAGGATAGTA AAACTGAGAC GTCAGCATCT TGTCTGACCA TAGAAGAATG
  CTGTCTGCCC AGTAGTTCCT TACTCTCAGT AGTAGACCGA CAGCAGAGAG GTGGTCAAGC
  R
  AATCAGCAGC TGGACCTACA TGCTGTTGGA AGGTTGGTGG GAAGCGCAGT GTTGGCTATA
  CTCAGCTTGC TCATCTTCTT CAAAAGGCCT ACTCACTGTT TTTTGTTTAC TAAATTTTTA
  CTTAAAAGCT AAGTTTGAAA GAATGTAAAA ACTCCTTAGA AATACCATAT CCAAGTTTAT
  TTTGAAAATT CTCTTCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983807	NES10793669	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30781954					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983807	NES10793669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60414500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577412	regulatory region 577412			1763 bp distal
Rr577413	regulatory region 577413			993 bp proximal
Tssr29287	transcription start site region 29287			1385 bp upstream