rs30781009 SNP Detail

Summary

• ID
  rs30781009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136162343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTAACAG GATAAACAGG
  GAGATAAAAT TAATTAGAAC CATCATAGTT CTAATTAATC TATCACTCTA CAACATATGG
  ACGGTAGAGT GATAAAAATT TAGGGTTTAA AGGAAGCACA TCCAGGCTAG AATCCTAGCT
  CTGCCTCCTT CCTCTGTGAC AACGCCAGAC TGGTCAGCTT CCACAAGTCT CCATTCTCAC
  S
  CATGGATGAG CTGAGCTGAA GGATAACACG CTCCTTCCAG GCTGCTAGTA TAGTCTGTGA
  GGTGACTAGG GCCTGGCGCA GGATGTCAGT GTGTGCAGCA GTTGGGGTTG TTAATCTTTG
  TTGTTGTTTG TCCCTGTGTA CTTATCCTGA GCAGTATTGA AATCCACCTG AAGGAGAAAA
  CTCAATTTAG AAGATTAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984218	NES10874268	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30781009					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984218	NES10874268	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136162343 () rs orientation: forward

Symbol	Name	Function Class
Rr585825	regulatory region 585825	405 bp distal
Rr585826	regulatory region 585826	2 bp proximal