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rs30781009 SNP Detail
Summary
  • ID
    rs30781009
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:136162343 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTCTAACAG GATAAACAGG
    GAGATAAAAT TAATTAGAAC CATCATAGTT CTAATTAATC TATCACTCTA CAACATATGG
    ACGGTAGAGT GATAAAAATT TAGGGTTTAA AGGAAGCACA TCCAGGCTAG AATCCTAGCT
    CTGCCTCCTT CCTCTGTGAC AACGCCAGAC TGGTCAGCTT CCACAAGTCT CCATTCTCAC
    S
    CATGGATGAG CTGAGCTGAA GGATAACACG CTCCTTCCAG GCTGCTAGTA TAGTCTGTGA
    GGTGACTAGG GCCTGGCGCA GGATGTCAGT GTGTGCAGCA GTTGGGGTTG TTAATCTTTG
    TTGTTGTTTG TCCCTGTGTA CTTATCCTGA GCAGTATTGA AATCCACCTG AAGGAGAAAA
    CTCAATTTAG AAGATTAAAA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46984218 NES10874268 PERLEGEN MM_PANEL2 f SNP G G G G G G C G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30781009 SNP G G G G G G C G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46984218 NES10874268 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:136162343 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr585825 regulatory region 585825 405 bp distal
Rr585826 regulatory region 585826 2 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory