rs30780399 SNP Detail

Summary

• ID
  rs30780399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60485172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACATAAT TAACCGTGTT
  GCTGCTTAAG AGGAAAATTA AAGCTCTCTG AGTTGGCCTT GCACACCTCC TTGTCTGTCT
  GCCTCAGTGT GTCTTTGTTT GTTCAGGTAG ACAGCAACCC TGATGAAGTG GAGGGGATTT
  GTCCATTTAG GAATGTTTAG AGATCTGGGG GATACACTAC ACCGAATTAT CAAGGTTCTT
  Y
  TCATAACCAG ACTATACAAA CAGCACTTGA GAAATTAGTG CAGAAAGGTT TGTAGCATCA
  TTCTGTCATC AGTAGAATTC TGATCTTTGG ATTTTTAACC CTCACCAACC CTGTCTAATA
  GCTCAGAGCA GCAACATAGC CAGCCTCCTT CTGTATTCTC CAGCAGTTCC CGTGCTGAGA
  GCAGATCTCT CGTTTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984349	NES10792777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30780399					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984349	NES10792777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60485172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19816	predicted gene, 19816			within coordinates
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577430	regulatory region 577430			1513 bp distal
Rr577431	regulatory region 577431			700 bp distal
Tssr29310	transcription start site region 29310			1912 bp downstream