rs30780397 SNP Detail

Summary

• ID
  rs30780397
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60485132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCTGGT TTTAAATATT
  TAAAAGAATA CCAAAGATTC ATGACATAAT TAACCGTGTT GCTGCTTAAG AGGAAAATTA
  AAGCTCTCTG AGTTGGCCTT GCACACCTCC TTGTCTGTCT GCCTCAGTGT GTCTTTGTTT
  GTTCAGGTAG ACAGCAACCC TGATGAAGTG GAGGGGATTT GTCCATTTAG GAATGTTTAG
  M
  GATCTGGGGG ATACACTACA CCGAATTATC AAGGTTCTTT TCATAACCAG ACTATACAAA
  CAGCACTTGA GAAATTAGTG CAGAAAGGTT TGTAGCATCA TTCTGTCATC AGTAGAATTC
  TGATCTTTGG ATTTTTAACC CTCACCAACC CTGTCTAATA GCTCAGAGCA GCAACATAGC
  CAGCCTCCTT CTGTATTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984347	NES10792776	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30780397					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984347	NES10792776	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60485132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19816	predicted gene, 19816			within coordinates
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577430	regulatory region 577430			1473 bp distal
Rr577431	regulatory region 577431			660 bp distal
Tssr29310	transcription start site region 29310			1872 bp downstream