rs30779783 SNP Detail

Summary

• ID
  rs30779783
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60484152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTACTGC AGTGTTATAA
  AAATAGATTA GGTAAACAGA CACAGCAGGC CCATGCGGCT TGGGTTCTGA CTCCTCCCCA
  GACTTAGTAT AACTTTAATA GGCTGTAGTT CTAAAGAGAA CTATGAATCT CTAGGGTGAT
  TTCAATATTA TATAACGAAG GAGGAGCTGT TTTATAGCAA GGAATCAGGT GTTATGTCTT
  S
  TAAAATAATT TCAGAGAGGT TTATCTGAAA GCTTCAGTTT TTAAGCTATT CCAGGCGACG
  GTGGACGTCT TTATTTTTTG CCTTTGCTAT TTTTAGAGCC CTGCAGTAGC ATAACCCTGC
  ACCGCACACA AAGCAGTACG GCAGTTGGTG TTGGATGCAG AATTGCTATT AGATGAAAGC
  TAACAAAGCA AATCCTTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984343	NES10792774	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30779783					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984343	NES10792774	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60484152 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19816	predicted gene, 19816			968 bp upstream
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577430	regulatory region 577430			493 bp distal
Rr577431	regulatory region 577431			within coordinates
Tssr29310	transcription start site region 29310			892 bp downstream