rs30779775 SNP Detail

Summary

• ID
  rs30779775
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60482090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCATTCT AGAGGACTGC
  TTCTCAGTTA CATGGCAAGG ACGCACTGAC TCACAGCCTA GAGCTGCTTG GTGGCTGCCC
  TGGACAAAAG AAGCAAAGGT TCCTAGAAGG TAGCCCTAGC CTTCGGATTT GGCACCAGTG
  TCTGCACTGT TCCCCATAGC TCCTCAGTTA CCCATGCAGA TTCTTGTCTC TGCTCTTGAT
  W
  TCAGTGAGCC CTGATTACCA ACAGATTGTA AAAGGGGGTA GAATTTAGTA CCAACCGATA
  CCTGGGATTC TTCAAAGTAC ACCAAGTCCC TTGTGAAGAC ACAGCTGTGG TTAAAAGGTG
  CTAAGGGTCT GCCAAATTAT CTAATGCCAC ATGTCTTATG TCTTAGGAGT GACACCATAT
  GTAAACGCTT GCTTCAGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984335	NES10792845	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30779775					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984335	NES10792845	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60482090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577429	regulatory region 577429			6 bp distal
Rr577430	regulatory region 577430			1305 bp proximal
Rr577431	regulatory region 577431			1692 bp proximal
Tssr29310	transcription start site region 29310			1168 bp upstream