rs30779052 SNP Detail

Summary

• ID
  rs30779052
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136163848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGTGAA ATAGAGGCAG
  GAAGACCAGA AGCCCATGGT CATCCTGGAC TGTATAGCAT GTATGAGGCC TGTGGTAAAT
  GGGAGAGACT CTGTTGGAAA TTAAAAGTAA AAGATGAATT GAAGCTAAAA TGCAGGTTAA
  GTTACTTGTT CGTCGTTGTT ATATAGTACA TAATAAGGAA GAGCTGAAGA CCGTCATTAC
  M
  CAGGGGATTA CACTCTCACA CACACACACA CACACACACA CGCACACACA CACACACACT
  CACACACACA CTCACACACA CACACACACA CACTCACACA CACACACACA CACACACACA
  CTCACACACA CACACACACA CACACACACA CACACACACA CACACACACA CATTTTCACC
  AAAAATTATG TCACTTTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46984232	NES10874240	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30779052					SNP	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984232	NES10874240	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136163848 () rs orientation: forward

Symbol	Name	Function Class
Rr585825	regulatory region 585825	1910 bp distal
Rr585826	regulatory region 585826	999 bp distal