rs30779050 SNP Detail

Summary

• ID
  rs30779050
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136163435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGAGTC ATGCAGTCCA
  TGAATGTTTC TGAATAATAT CCCTTAACAC CCTTATTCTT ATTGTTTCAA TGGTATCACT
  CAAATAATAC CAATAATAGC AAAAATAGTA ATAATTATTT CTGTCATATT TCTCTTTTCA
  ACTGGCTGTG TATTGTGTGC ACAGAACATA CTGATTCAAT AATGGTAATA TAGTGAGCCC
  W
  ATCTAAAAAC ACAGAGCAAG GGAAGAAGGA GGTAAGGGTA AAGATGGAGA GAAGGAGAGG
  AGGGGGAGGA GAGCAAAAGG ATGGGAGGGA GAAAAGAAAT TAGCATTAGT AGCAAAGCTC
  AGTTAGTAAG AGTGTCGGCC TAGCATACAC AAGGACCTCG TTGAAATGCT GGCTCAATGA
  ACCCAGGTAT ATTGATGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46984230	NES10874274	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30779050					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984230	NES10874274	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136163435 () rs orientation: forward

Symbol	Name	Function Class
Rr585825	regulatory region 585825	1497 bp distal
Rr585826	regulatory region 585826	586 bp distal