rs30778780 SNP Detail

Summary

• ID
  rs30778780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136148364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATAAGCA CTTGGTAGCA
  TCCCACTGTC CAGGAGGGAG TAGGGCGGGG GTTGGGACTC CTTAGCCAGA GGGTACAGCA
  ACTCTTGTCT CAAGTCCAAA GCCCCAAAGG CATCAGTGTG TTTGGCTAAA GCATCTTGAA
  GTCTGAGGTG TAGGGAGAAA TCTGTTTAAA ATGGTAGTTT GATTTTGTGA GGATCCAGCC
  Y
  TGGTGTGGTG ATCATCAACT GGAAATGTCC AGGAATCCTA AACAGAAAGG GAAGGCAGAG
  CTCGTTCAGG GACCGAGGGG TGCCCTATCT GCTCTCCCCT GGTTGGAGGA GGCCAGTGGG
  TTATGAGGCT CTTCCTCTAT TTTCTTGGTA AGTTCTTAGA AAGTGTAGCT ATGTGGGTCA
  GAGGAAAGAG AAGCAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46984186	NES10874863	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30778780					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984186	NES10874863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136148364 () rs orientation: forward

Symbol	Name	Function Class
1700030L20Rik	RIKEN cDNA 1700030L20 gene	within coordinates
Rr585823	regulatory region 585823	256 bp distal