rs30778459 SNP Detail

Summary

• ID
  rs30778459
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60326827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATGGAT TTTTTGTCTT
  TTTTTGAGAT TGCTTTAGTT CACTTATATG AACTAAATCA TTCTCCATAA TTAAAAAACA
  TAGTCATGTC TAAAAGAGAT TTGCTGTGCA GCCTTTGTGG TCACAGGTGA GAAGCTGTAT
  ACCAATGGCT TGCGATGAGT GGGGCTTACA CGTATGAATG AGGGAGAGAA AGCTCTTTGA
  S
  TCTTCTGGGA GGAAACCTAT GCGGTGAGGA TTCTGAAGCT CAGTGCTTTA CCCCACCCCA
  GCCCATGCCT GCCCTTTCTT GTTTGGCTCA GGAGAGTTCA AAGGAAGAAA AACAACACAG
  CTTGCACTGT AATTAATCCC AATATATTCC TAACCACAAG CTAGAAAACT TGCTTCTTCT
  AAATATCCCT CTTCTCTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45539466	mCV22663043	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				G		G
ss46983483	NES10785990	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G		G	G	G	G	C		G	G	C	C
ss135219122	ENSMUSSNP7050984	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30778459					SNP	G	G	C	G	G	G	G	G	G	G	G	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983483	NES10785990	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60326827 () rs orientation: forward

Symbol	Name	Function Class
Gm54175	predicted gene, 54175	within coordinates
Rr577391	regulatory region 577391	448 bp distal
Rr577392	regulatory region 577392	within coordinates