rs30778208 SNP Detail

Summary

• ID
  rs30778208
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136006925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAATGG CAAACCAGCA
  AAGTGTGTCT CCTGCCACCC ACAGAATTTC CCTAAGAGCC CCCCTGGGGC TCATGTTCAC
  AGTAAACAAG ACTTCTGGGA AGCAAGGGAT CCAAATACTA AAAATCTCTA GAAAATCCTT
  TTGGCCTGGG ACAGCAGTTG ACAGCAACTA CTTCAGTGTC ACTTTTAAAC CCATTTTCTT
  S
  TAAAAGTAAG GGGATAATCC TTTAAAAATA CTCAGGATAG CTAGAACAAT CCTGTACAAT
  AAATTAACTT CTAGAGTTAT CACTTATCAG TGATGTCAAA CTGTACTACA GAGCAATAAT
  AATAAAAAAA CAGCAGGTAT TGTCACAAAA ACAGACAGGT TGATCAATGG AATAGAATCT
  AAGACCAGAA AAAAAAAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ
ss46983176	NES10880000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ
rs30778208					SNP	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983176	NES10880000	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136006925 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr398054	regulatory region 398054	within coordinates
Rr585816	regulatory region 585816	within coordinates