rs30778206 SNP Detail

Summary

• ID
  rs30778206
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136006219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTCCTC CTTCCTGAAA
  TCCTTCCATG AACTTGGCTT ATCTAGCATG CAAAACAATA CACATAAACT AAGCTTTCAT
  TGCTAACATG TAATACCCTT CACATGACCT GAAACTCTCA AAAGAGCTTG AAGTTACATA
  AGCAAACTTT CAATTACTGC TTTGATAGTG ATGTCTTCCA AGAGTTTTGC TATGTGCAGA
  W
  TTGCATATGA CATATTATAA ATACATTATG GATCAAGAAC AAACATTTAA AAACCTGAAA
  AAAATTTAAT CTCCAATTAT ATAAATCAGA GATTTGAGTC AATGGTGAAG ACTGGTGAAT
  ACTTTGGAAC ATAAGTTATA TACTAGAAAA CAAGTACATA TGGAAACAAA GTGTGGGTGA
  ACATCTATGC ATTTGATGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983174	NES10880024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30778206					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983174	NES10880024	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136006219 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr398054	regulatory region 398054	441 bp upstream
Rr585816	regulatory region 585816	463 bp proximal